Just for clarification for those who don't know: The "007" theme is different from the James Bond theme(which has appeared in some form or another in every "official" Bond film). "007" is an action theme composed by John Barry and it appeared in the following sequences:
FRWL: when Bond, Tatiana and Kerim steal the lector from the Russian consulate and escape thru the tunnel.
TB: "007" is heard in the background during the final underwater battle.
YOLT: When "Little Nellie" is being assembled and when Bond takes off in "Little Nellie" and flies her to Ama Island prior to the battle with the SPECTRE helicopters.
DAF: During the final battle on Blofeld's oil rig.
MR: The boat chase in the Amazon Jungle(not the one in Venice with the bondola).